R/Bioconductor for Multi-Omics Data Science

Additional Resources

Need to review?

If you need to check what packages are part of the tidyverse, you can do so at this link.

RStudio shortcuts can be found here.

Extra information about file paths can be found here.

Need help?

Various RStudio “Cheatsheets”
R reference card
R jargon
R terminology
What is the Tidyverse?
Animations of join functions: full-join() inner_join() left-join() right-join()
PC users who want to see how to move files around (especially from downloads), check out this video: https://youtu.be/we6vwB7DsNU
Mac users who want to see how to move files around (especially from downloads), check out this video: https://www.youtube.com/watch?v=Ao9e0cDzMrE

Want more?

Tidyverse Skills for Data Science Book
(more about the tidyverse, some modeling, and machine learning)
Tidyverse Skills for Data Science Course
(same content with quizzes, can get certificate with $)
R for Data Science
(great general information)
R basics chapter of Introduction to Data Science by Rafael A. Irizarry (great general information)
Open Case Studies
(resource for specific public health cases with statistical implementation and interpretation)
Dataquest
(general interactive resource)
Quick R Guide
(nice free general resource)
Building up a ggplot2 figure
(guide to making plots)

Interested in Reproducibility?

Check out Candace’s courses:

R for Stata, SPSS, and SAS files

The Haven package
(This package is super useful for reading and writing files so that they are compatible across Stata, SPSS, SAS, and R)
R vs Stata
(See page 505)